• bioinfornatics (24/24) Dec 16 2012 Dear,

bioinfornatics <bioinfornatics fedoraproject.org> writes:

Dear,
I wrote some parser for biology purpose.=20
Goal:
- Parser should not load the file in memory
- be efficient
- use Memory mapped file more as possible

Simen get a good point, module shown into learn section could interest
some developer. For this reason i create an organization into github
named bioparser-developers . Then you are all welcome to fork,fix,commit
to the project bioparser:
https://github.com/bioparser-developers/bioparser/tree/master/src/parser

I do not know if we should have a more generic name and add other format
than biology. You have the power to choose and contribute :)

Current supported format:
- Fasta mmfile yes
- Fasta mmfile yes
- UCSC mmfile no
- matrix mmfile no

Note: matrix file is not a standard just data stored into a file as:=20
[ [1, 2, 3], [4, 5, 6] ]
stored too
1 2 3
4 5 6


thanks to all